[Bioperl-l] Bio::DB::SeqFeature::Store delete() not working

Sendu Bala bix at sendu.me.uk
Wed Jan 31 11:10:12 UTC 2007


I'm trying to use Bio::DB::SeqFeature::Store delete() on a list of 
Bio::SeqFeature::Annotated retrieved from the database. It doesn't work. 
I presume I'm falling foul of the issue pointed out in the docs:

"WARNING: The current DBI::mysql implementation has some issues that
need to be resolved, namely (1) normalized subfeatures are NOT
recursively deleted; and (2) the deletions are not performed in a

Is there a trick to avoid the problem? Or, how might someone go about 
improving the implementation so that it worked?


More information about the Bioperl-l mailing list