[Bioperl-l] Translate sequences align and reverse translate

[Albert Vilella]

There are some dirty dirty scripts in:

http://ortholytics.googlecode.com/svn/create_alignment_sets.PLS
(this one relies on orthology info from orthomcl)

http://ortholytics.googlecode.com/svn/launch_probcons_sets.PLS
http://ortholytics.googlecode.com/svn/launch_aa_to_cds_dna.PLS

You may find some of the stuff of interest,

Cheers,

    Albert.

On 1/18/07, Anthony Underwood <Anthony.Underwood at hpa.org.uk> wrote:
> Hi All,
>
>
>
> I would like to automate the process of taking coding DNA sequences,
> translating them to amino acids, aligning them with clustalw and then
> reverse-translating back to DNA so as to obtain the best alignment. I
> can think of how I would do this with bioperl but since it is probably a
> common process  I would like to ask if anyone already has such a script
> that they wouldn't mind sharing so I don't re-invent the wheel.
>
>
>
> Many thanks,
>
>
>
> Anthony
>
>
>
>
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