[Bioperl-l] Translate sequences align and reverse translate

[Anthony Underwood]

Hi All,

 

I would like to automate the process of taking coding DNA sequences,
translating them to amino acids, aligning them with clustalw and then
reverse-translating back to DNA so as to obtain the best alignment. I
can think of how I would do this with bioperl but since it is probably a
common process  I would like to ask if anyone already has such a script
that they wouldn't mind sharing so I don't re-invent the wheel.

 

Many thanks,

 

Anthony




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