[Bioperl-l] Bio::Tools RNA modules
cjfields at uiuc.edu
Wed Jan 3 20:35:28 UTC 2007
I have added several RNA motif-based parsing modules (Infernal,
RNAMotif, ERPIN) over time to Bio::Tools. However, I am in the
process of modifying them for SearchIO-based parsing (possibly using
Sendu's PullParserI and related modules), simply b/c I am also
writing wrappers for said modules and want comparable results.
I'll be committing the newer SearchIO-based modules over the next
month or two, beyond which I don't see the point of maintaining the
various Bio::Tools-based versions. Does anybody mind if they are
deprecated by the next release?
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