[Bioperl-l] LocatableSeq object vs Sequence Object

Brian Osborne bosborne11 at verizon.net
Thu Oct 19 00:54:04 UTC 2006


I'm not understanding your question, partly because your letter and your
code are saying different things. You say you want to call
location_from_column() but your code shows you calling species(). What
happens when you call location_from_column? Do you see errors?

Brian O.

On 10/17/06 12:26 PM, "Peter H. Baenziger" <plu5even at gmail.com> wrote:

> I was thinking I could use:
> foreach $seq ($alignment->each_seq())
> to loop through the sequences and call:
> $seq->location_from_column($pos)
> on each of the sequences.  

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