[Bioperl-l] X.Y Fuzzy locations no longer supported in GenBank/EMBL/DDBJ

[Chris Fields]

Do they still use the X.Y notations?  Those are the most troublesome.  I
guess we still don't support the ones containing '?'.

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 


> -----Original Message-----
> From: Brian Osborne [mailto:bosborne11 at verizon.net]
> Sent: Wednesday, October 18, 2006 9:43 AM
> To: Chris Fields; bioperl-l at lists.open-bio.org
> Subject: Re: [Bioperl-l] X.Y Fuzzy locations no longer supported in
> GenBank/EMBL/DDBJ
> 
> Chris,
> 
> I'm fairly sure that Swissprot/Uniprot still supports fuzzy locations, all
> of the more recent examples in t/LocationFactory.t come from there.
> 
> Brian O.
> 
> 
> On 10/18/06 9:55 AM, "Chris Fields" <cjfields at uiuc.edu> wrote:
> 
> > EMBL/DDBJ formats are also dropping support for these 'fuzzy' locations.
> > Not sure about UniProt/SwissProt.