[Bioperl-l] Clean-up of Bio::Root::IO
cjfields at uiuc.edu
Fri Oct 6 15:03:45 UTC 2006
On Oct 6, 2006, at 9:03 AM, Hilmar Lapp wrote:
> This is a 1.5, i.e. developers release that's in the works, and also
> you'd be doing this on the main trunk. If you get the tests to pass
> there's no reason to hold back.
> You may be right and in reality it has repercussions somewhere, but
> those will be the opportunities to improve our test suite.
Agreed, though I think Sendu only wants bug fixes for 1.5.2. You
could always commit to CVS HEAD and it could be in 1.5.3.
Let me rethink that. There were some subtle tempfile/tempdir issues
that were popping up on WinXP where the some tempfiles were not being
deleted b/c of permissions issues; I had planned on adding that to
Bugzilla today or tomorrow. Maybe changing to File::Temp would fix
that, so in essence it would be a bug fix!
I'll go ahead and post the bug.
>> Although all tests pass with my new trim Bio/Root/IO.pm I am still
>> concerned about committing as the assumption is that the BioPerl
>> test suite is good enough to handle such a change to an important
>> module, but the reality may be different :-)
>> Let me know if you think I should commit anyway,
>> Your advice is appreciated.
> : Hilmar Lapp -:- Durham, NC -:- hlapp at gmx dot net :
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign
More information about the Bioperl-l