[Bioperl-l] **Fwd: Re: URGENT: Bio::Graphics::Panel make the ruler have

[Kevin Lam Koiyau]

Hi!
oh it was in a slightly different header asking about the create image map
feature.
I am using the stable version 1.4 of bioperl now. In any case I have not
added the sequence as a feature annotated seq. as I already have the bp
where the TF binds (in 1-1050 numberings) so what I did was to just add
graded segments based on the position.
I saw that there is a scale function for the arrow glyp however, it is a
multiply function, can it be hacked to take in a offset value (ie minus the
scale by 1000?)

cheers
kevin


Hi,
>
> For some reason I didn't see the first posting on this. In current bioperl
> live, the ruler can have negative numberings - I use this routinely. You
> need
> to create a feature that starts in negative coordinates. What is happening
> to
> you when you try this?
>
> Lincoln
>
> On Wednesday 24 May 2006 21:59, Kevin Lam Koiyau wrote:
> > Hi
> > thanks for the help offered thus far!
> > sigh I am trying to annotate TFBS on a -1000 to +50 bp promtoer seq
> using
> > bioperl. therefore i was asked to make the numberings as such (-1000) is
> > there any way at all to do this in bioperl without changing the .pm
> file?
> >
> > thanks guys..
> > kevin
> >
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