[Bioperl-l] parsing xml output
Hubert Prielinger
hubert.prielinger at gmx.at
Fri May 19 16:52:28 UTC 2006
hi,
I wondered whether is it also possible in the xml output (either WU or
NCBI - Blast) to get the species (taxononmy) for every hit, if I do a
general search.
regards
Warren Gish wrote:
> Right, the WU-BLAST tabbed output contains more fields. (See http://
> blast.wustl.edu/blast/tabular.html).
> --Warren
>
>
>> Whoops - sorry Warren - for some reason I had it in my mind that it
>> was different. So the blastxml parser should work fine. The
>> WUBLAST tab-delimited output is different than NCBI's -m8/9 though,
>> right?
>>
>> -jason
>>
>
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