[Bioperl-l] parsing xml output

Hubert Prielinger hubert.prielinger at gmx.at
Fri May 19 16:52:28 UTC 2006


hi,
I wondered whether is it also possible in the xml output (either WU or 
NCBI - Blast) to get the species (taxononmy) for every hit, if I do a 
general search.
regards

Warren Gish wrote:
> Right, the WU-BLAST tabbed output contains more fields.  (See http:// 
> blast.wustl.edu/blast/tabular.html).
> --Warren
>
>   
>> Whoops - sorry Warren - for some reason I had it in my mind that it  
>> was different.  So the blastxml parser should work fine.  The  
>> WUBLAST tab-delimited output is different than NCBI's -m8/9 though,  
>> right?
>>
>> -jason
>>     
>
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