[Bioperl-l] parsing xml output

[Torsten Seemann]

> what is the best way to parse NCBI- and WU- Blast XML output....
> and is it possible to parse both with the same parser, or differ their 
> XML output...


For NCBI BLAST XML format, use
	Bio::SearchIO->new(-format=>'blastxml', ...)

I don't know if 'blastxml' will load WU-BLAST XML format.
http://www.bioperl.org/wiki/HOWTO:SearchIO does not mention it.

Why not try it, and report back the results to the bioperl list?

-- 
Dr Torsten Seemann               http://www.vicbioinformatics.com
Victorian Bioinformatics Consortium, Monash University, Australia

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