[Bioperl-l] bioperl-db working (for the moment) on Win32

[Hilmar Lapp]

Same here, thanks. We'll include your write-up in CVS. -hilmar

On Jan 17, 2006, at 6:02 PM, Barry Moore wrote:

> This is very helpful Chris.  Thank you.
>
> Barry
>
>> -----Original Message-----
>> From: bioperl-l-bounces at portal.open-bio.org [mailto:bioperl-l-
>> bounces at portal.open-bio.org] On Behalf Of Chris Fields
>> Sent: Tuesday, January 17, 2006 6:45 PM
>> To: bioperl-l at portal.open-bio.org
>> Subject: [Bioperl-l] bioperl-db working (for the moment) on Win32
>>
>> Hilmar,
>>
>> Just wanted to drop a line saying bioperl-db seems to be up and
>> running on Windows (at least for the moment!). All tests pass using
>> ActivePerl and cygwin-perl.  I am trying to sort out the issue with
>> throw in Bio::Root::Root (specifically, why it doesn't work without
>> the added comma; I'm trying the modifications to Root.pm on Mac OS X
>> now) and am trying to also figure out why bioperl and bioperl-db give
>> tons of warnings using ActivePerl (most just state that x subroutine
>> was redefined in y.pm line z, so aren't serious).  This is an
>> ActivePerl or nmake issue and not a bioperl problem as there are no
>> warnings using 'make test' in cygwin.  I am in the midst of writing
>> up the steps for installing bioperl and bioperl-db using MySQL as the
>> relational DB with either ActivePerl or cygwin; I really don't have
>> much experience with postgreSQL, oracle, MsSQL (B. Wang's added
>> modules), etc., but I can't see any reason why they wouldn't work.
>>
>> Christopher Fields
>> Postdoctoral Researcher
>> Lab of Dr. Robert Switzer
>> Dept of Biochemistry
>> University of Illinois Urbana-Champaign
>>
>>
>>
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>
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-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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