[Bioperl-l] Generalized Suffix Tree in BioPerl?

Edward WIJAYA ewijaya at singnet.com.sg
Mon Jan 9 17:50:56 EST 2006


Hi,

Does anybody know if BioPerl has any implementation
on Generalized Suffix tree?

By "generalized" I mean:
given a set of multiple DNA strings/sequences
we would like to construct  a single tree out of it.

What I can only find so far is Shlomo Yona`s SuffixTree
module in CPAN. And it is not generalized, meaning
it  only create one tree for one string.

Hope to hear from you gain.

-- 
Regards,
Edward WIJAYA
SINGAPORE


More information about the Bioperl-l mailing list