[Bioperl-l] BioSQL, bioperl-db and UniGene

[Sean Davis]

On 1/5/06 2:02 PM, "Hilmar Lapp" <hlapp at gmx.net> wrote:

> 
> On Jan 5, 2006, at 5:26 AM, Marc Saric wrote:
> 
>> I am currently writing an app which should map microarray probe
>> sequences to target sequences. It should do so in a generalized manner
>> (i.e. any microarray against an arbitrary sequence-database). Currently
>> I need UniGene for Zebrafish (Dr.*) and several Oligonucleotide libs,
>> among them an Affymetrix array.
> 
> First off, you have seen the TIGR RESOURCERER application
> (http://www.tigr.org/tigr-scripts/magic/r1.pl), right?

And, since we started out talking about microarrays, are you aware of the
BioConductor project and their annotation efforts, as well as a connection
to Resourcerer?

Sean