[Bioperl-l] bioperl script error

[Andreo Beck]

Hi Bioperl,

Any clue what may be the cause of this exception? The sub-sequence seems to be within the valid range.

 ------------- EXCEPTION  -------------
MSG: Undefined sub-sequence (75,77). Valid range = 17 - 77
STACK Bio::Search::HSP::HSPI::matches /cmpchome/andyb/lib/perl/Bio/Search/HSP/HSPI.pm:711
STACK (eval) /cmpchome/andyb/lib/perl/Bio/Search/SearchUtils.pm:365
STACK Bio::Search::SearchUtils::_adjust_contigs /cmpchome/andyb/lib/perl/Bio/Search/SearchUtils.pm:364
STACK Bio::Search::SearchUtils::tile_hsps /cmpchome/andyb/lib/perl/Bio/Search/SearchUtils.pm:176
STACK Bio::Search::Hit::GenericHit::length_aln /cmpchome/andyb/lib/perl/Bio/Search/Hit/GenericHit.pm:740
STACK toplevel /var/spool/slurmd/job01852/script:30

Andy



		
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