[Bioperl-l] writing blastxml
Bob Freeman
bobfreemanma at speakeasy.net
Fri Dec 8 20:47:15 UTC 2006
Can't seem to find a good post on this to answer my question:
Does anyone know a good way to (re)write BLAST reports in XML format?
I've got about 30,000 reports I need to rewrite for a (good!) piece
of java software that will only import xml formatted BLAST reports.
Right now, all mine are plain text.
I don't think bioperl can do this yet, correct? If not, any
suggestions, besides reblasting all 30,000? I'd like to save a few
trees and lumps of coal.
TIA,
Bob
--
-----------------------------------------------------
Bob Freeman, Ph.D.
Bioinformatics consultant
51 Downer Avenue, #2
Dorchester, MA 02125
617/699.7057, vox
If brains were taxed, he'd get a refund.
-- Anonymous
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