[Bioperl-l] nt frequencies at 4 fold degenerate sites

[Nathan S. Haigh]

A colleague would like to calculate the nt frequencies of 4 fold degenerate
sites of coding regions in a GenBank file. Does anyone know if there might
ba a script that can do this, or something similar that I might be able to
rip apart in order to do accomplish this? Any pointers to particular modules
that I might find useful for doing this would be good - I've been told not
to spend too much time on this.

 

Cheers

Nathan

 

----------------------------------

Nathan S. Haigh

Bioinformatics PostDoctoral Research Associate

 

Room B2 211

Department of Animal and Plant Sciences

University of Sheffield

Western Bank

Sheffield

S10 2TN

 

Tel: +44 (0)114 22 20112

Mob: +44 (0)7742 533 569

Fax: +44 (0)114 22 20002

 

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