[Bioperl-l] sanity check an update the bioperl-run's t/ProtDist.t

[Jason Stajich]

Totally rounding either at the perl level or depending on how your  
phylip is built.Can you put some sprintfs in there and just test on 3  
sigfigs?

ok(sprintf("%.3f", $matrix->get_entry('ENSP000003','SINFRUP001')),  
0.277);

Thanks,
-jason

On Sep 27, 2005, at 3:56 PM, George Hartzell wrote:

>
> I'm wrenching on some of the rc2 bioperl-run code, touching it up to
> work better with Phylip 3.6.
>
> After tuning up PhylipConf.pm, I'm getting this for one of the tests:
>
>   # Test 9 got: "0.277077" (t/ProtDist.t at line 98)
>   #   Expected: "0.27708"
>   #  t/ProtDist.t line 98 is: ok($matrix->get_entry 
> ('ENSP000003','SINFRUP001'),0.27708);
>
> I'm inclined to excuse the difference as my perl providing another
> digit's worth of detail (accuracy? ;)).
>
> Do folks agree, or is there something else going on?
>
> g.
>
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--
Jason Stajich
Duke University
http://www.duke.edu/~jes12