[Bioperl-l] sanity check an update the bioperl-run's t/ProtDist.t

George Hartzell hartzell at kestrel.alerce.com
Tue Sep 27 15:56:17 EDT 2005

I'm wrenching on some of the rc2 bioperl-run code, touching it up to
work better with Phylip 3.6.

After tuning up PhylipConf.pm, I'm getting this for one of the tests:

  # Test 9 got: "0.277077" (t/ProtDist.t at line 98)
  #   Expected: "0.27708"
  #  t/ProtDist.t line 98 is: ok($matrix->get_entry('ENSP000003','SINFRUP001'),0.27708);
I'm inclined to excuse the difference as my perl providing another
digit's worth of detail (accuracy? ;)).

Do folks agree, or is there something else going on?


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