[Bioperl-l] Re: [BiO BB] About array CGH data based on BAC clones

[Hilmar Lapp]

Phillippe,

what is the license on these software packages? Except for GLAD (which 
presumably is licensed as OSS compatible with Bioconductor), the 
website states the notorious 'available upon request,' leaving it to 
everybody's guess what license applies upon whose request. Is there a 
reason not to openly and explicitly state the license(s)?

	-hilmar

On Oct 19, 2005, at 3:08 AM, Philippe Hupé wrote:

> Alex Zhang a écrit :
>
>> Hello everyone,
>>
>> Is there anybody who has the experience of
>> analyzing array CGH data based on BAC clones
>> to identify the BACs which are amplified or
>> deleted(gain or loss)? Any soft tools or packages recommended?
>>
>> Thank you very much ahead of time!
>>
>> Sincerely,
>>  Alex
>>
>>
>> 	
>> 		
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>>
>>
> Dear colleague,
>
>
> The bioinformatics team of Institut Curie has developed several tools 
> related to the analysis of array CGH data:
> - GLAD for breakpoint detection
> - MAIA for automatic microarray image analysis
> - MANOR for normalisation of microarray data - VAMP, a java graphical 
> interface for visualisation and analysis of CGH profiles.
> - CAPweb, a suite of tools for the management, visualization and 
> analysis of CGH-arrays
> VAMP can be  requested at vamp at curie.fr , MAIA at maia at curie.fr , 
> CAPweb at capweb at curie.fr , GLAD at glad at curie.fr and MANOR at 
> manor at curie.fr
>
> A VAMP demo is available at http://bioinfo.curie.fr/vamp (Then click 
> on Direct Launch and File->Import)
> Two movies give you an overview of VAMP software capabilities.
>        - http://bioinfo-out.curie.fr/tutorial/vamp/vamp-demo1.html
>        - http://bioinfo-out.curie.fr/tutorial/vamp/vamp-demo2.html
>        - http://bioinfo-out.curie.fr/tutorial/vamp/vamp-demo3.html
>
>
> You can visit our Web site at http://bioinfo.curie.fr
>
>
> You can try CAPweb which is a complete web platform  at the following 
> url: http://bioinfo.curie.fr/CAPweb. It allows to analyze your data 
> directly from the gpr file and the clone info file. It includes the 
> normalization, the breakpoints detection, the data storage and the 
> visualization. This environment can be installed directly in our lab. 
> Do not hesitate to ask for questions at capweb at curie.fr
>
>
> Best regards,
>
>
> Philippe hupé
>
> -- 
> Philippe Hupé
> UMR 144 - Service Bioinformatique
> Institut Curie
> Laboratoire de Transfert (4ème étage)
> 26 rue d'Ulm
> 75005 Paris - France
> 	
> Email :  Philippe.Hupe at curie.fr
> Tél :	 +33 (0)1 44 32 42 75
> Fax :  	 +33 (0)1 42 34 65 28
>
> website : http://bioinfo.curie.fr
>
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>
-- 
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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