[Bioperl-l] Fwd: Could you help me to solve the problem about installing bioperl under Windous XP

[Scott Cain]

While there is not yet a full ppm build of bioperl 1.5.1, I created one
specifically for use with GBrowse.  It can be obtained at
http://www.gmod.org/ggb/ppm :

  ppm> rep add gmod http://www.gmod.org/ggb/ppm
  ppm> rep up gmod
  ppm> rep up gmod
.. (until it is at the top of the list)
  ppm> search bioperl
.. install

I would suggest that you uninstall the old bioperl first, as I don't
trust the ppm manager to do everything right.

Note that this ppm does not enforce most of the optional prereqs for
bioperl, just the minimum required for GBrowse.  Of course, after you
install bioperl, you can install GBrowse too:

  ppm>install Generic-Genome-Browser

(as long as you already have Apache installed as well).

Scott


On Wed, 2005-10-19 at 08:20 -0400, Jason Stajich wrote:
> 1.5.1 is not in a PPM right now, it requires someone to pack it up, I  
> don't know when it will be.
> 
> Sounds like you need to get make for windows.  I'm sure the windows  
> users on the list will be able to provide some help or point you to  
> already written documentation.
> 
> -jason
> 
> Begin forwarded message:
> 
> > From: <puddingwang at hotmail.com>
> > Date: October 19, 2005 7:04:47 AM EDT
> > To: jason.stajich at duke.edu
> > Subject: Could you help me to solve the problem about installing  
> > bioperl under Windous XP
> >
> >
> > Dr.jason.stajich:
> >    I am very glad to communicate with you to talk about  
> > bioperl-1.5.1 . I am a new guy about perl and need your help.
> >    I cannot install the lastest Core - bioperl-1.5.1 in my computer 
> > (OS: windows xp).According to the http://bioperl.org/Core/Latest/ 
> > INSTALL.WIN , like this:
> >
> >      ppm> rep add Bioperl http://bioperl.org/DIST
> >      ppm> rep add Kobes http://theoryx5.uwinnipeg.ca/ppms
> >      ppm> rep add Bribes http://www.Bribes.org/perl/ppm
> >
> >      ppm> search Bioperl
> >
> >      ppm> install <number>,
> >   I just install the Core bioperl-1.4.0.
> >
> >    And if I download the lastest bundle from http://bioperl.org/ 
> > DIST/bioperl-1.5.1.tar.gz and install in local-computer ,like this:
> >
> >      >perl Makefile.PL
> >      >make
> >      >make install
> >   I had a problem when I run ">make", the system worning:" 'make'  
> > is not recognized as an internal or external command, operable  
> > program or batch file."
> >   I hope you could help me to resolve this problem that is very  
> > easy about you.Thank you very much.
> >
> >
> >
> >                                                                Wang  
> > Guodong
> >                                                        Kunming  
> > Institute of Zoology
> >                                                                
> > CHINA,KUNMIN
> >
> > _________________________________________________________________
> > 与联机的朋友进行交流，请使用 MSN Messenger:  http:// 
> > messenger.msn.com/cn
> >
> 
> --
> Jason Stajich
> Duke University
> http://www.duke.edu/~jes12/
> 
> 
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                         cain at cshl.edu
GMOD Coordinator (http://www.gmod.org/)                     216-392-3087
Cold Spring Harbor Laboratory