[Bioperl-l] Please help

[Brian Osborne]

Angshu,

You need to study Bioperl's documentation. Take a look at relevant HOWTOs
(Beginners, SeqIO, SearchIO perhaps). Also, install the bioperl-run package
and look at the Bio::Tools::Run::Clustalw module.

Brian O.


On 10/12/05 3:48 PM, "Angshu Kar" <angshu96 at gmail.com> wrote:

> Hi ,
> 
> I'm completely new to perl. I'm have to work in biology using perl,
> postgresql (as database) and clustalw(as the alignment
> tool). I'm stating my problem briefly:
> 
> In the postgresql db the data is clustered using complete linkage
> clustering. I've to connect to that db, fetch those data, feed it to
> the multiple alignment tool, run it and show the results.Again,
> feed those alignments into a scoring tool and show the results in
> form of a histogram.All these needs to be automated using perl.
> I've installed bio-perl but can't get how to write code using it.
> 
> I'll be obliged if you help me with this by providing the idea of how
> to feed the db data (in fasta format) into clustalw.
> 
> Thanks,
> Angshu
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l