FW: [Bioperl-l] Program

[Peter Wilkinson]

Blast is open source, and I think you will find the source code in the NCBI
toolkit under tools under NCBI ftp site.

Otherwise it should be there under the ftp somewhere else under tools; all
ncbi resources are public, except for the blast load balancing software that
they use behind the web site.

You can download the local blast binaries from their ftp site as well.

Peter W.

-----Original Message-----
From: Zhang Chen [mailto:zhangchn2004 at gmail.com] 
Sent: November 22, 2005 11:38 AM
To: Barry Moore
Cc: bioperl-l at bioperl.org
Subject: Re: FW: [Bioperl-l] Program

Seems that NCBI Blast is not an oss project, anyway, but I still wonder if
there're some hints of its source code.

2005/11/23, Barry Moore <bmoore at genetics.utah.edu>:
> Manish,
>
> That comes from NCBI which is separate from the Bioperl project.
>
> http://www.ncbi.nlm.nih.gov/BLAST/download.shtml
>
> Barry
>
> > > -----Original Message-----
> > > From: bioperl-l-bounces at portal.open-bio.org [mailto:bioperl-l- 
> > > bounces at portal.open-bio.org] On Behalf Of Manish Kumar
> > > Sent: Tuesday, November 22, 2005 4:48 AM
> > > To: bioperl-l at bioperl.org
> > > Subject: [Bioperl-l] Program
> > >
> > > Hello,
> > >            I am Manish Kumar n I m M.Sc
> > > (Bioinfomatics) student n i need the perl program for BLAST. I 
> > > mean what is the program for BLAST that it gives this type of 
> > > results.
> > >
> > >
> > > For example:-
> > > Score = 40.1 bits (20),  Expect = 0.16 Identities = 23/24 (95%), 
> > > Gaps = 0/24 (0%) Strand=Plus/Minus
> > >
> > > Query  1     ATGTGTACGTGCGTGGTTACGTGC  24
> > >              ||||||||||| |||||||||||| Sbjct  8466  
> > > ATGTGTACGTGTGTGGTTACGTGC  8443
> > >
> > > The above is an example of the BLAST output. Now i need the 
> > > program for this output.
> > > thanking you
> > > Best Regards
> > > Manish
> > >
> > >
> > >
> > > __________________________________
> > > Start your day with Yahoo! - Make it your home page!
> > > http://www.yahoo.com/r/hs
> > > _______________________________________________
> > > Bioperl-l mailing list
> > > Bioperl-l at portal.open-bio.org
> > > http://portal.open-bio.org/mailman/listinfo/bioperl-l
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>

_______________________________________________
Bioperl-l mailing list
Bioperl-l at portal.open-bio.org
http://portal.open-bio.org/mailman/listinfo/bioperl-l