[Bioperl-l] Bio::DB::CUTG behaving weird

[Stefan Kirov]

Guys,
This very simple code gives a nasty warning and actually does not 
retrieve anything:
  my $db = Bio::DB::CUTG->new(-sp =>'Homo sapiens');
  my $cdtable = $db->get_request();
It does not run properly under SUSE 9.3, but it does just fine under 
Ubuntu 5. The code and the bioperl versions are the same (bioperl-live, 
updated today, even though CUTG goes back quite a while).

-------------------- WARNING ---------------------
MSG: probable parsing error - should be 21 entries for 20aa + stop codon
---------------------------------------------------
 If you go to 
http://www.kazusa.or.jp/codon/cgi-bin/spsearch.cgi?species=Homo+sapiens&c=s, 
you will see where the problem is. However, my Ubuntu machine goves 
warning that there are multiple choices and selects Homo sapiens. It may 
be the LWP::UserAgent. I am obviously missing something. Any ideas?


Stefan