[Bioperl-l] help with parsing meme output

[Stefan Kirov]

$instance->accession_number to get the sequence id
and
lenght is given by $instance->length
Stefan

Nandita Mullapudi wrote:

>Hi,
>I am trying to use  Bio::Matrix::PSM::IO to parse meme output.
>I need to extract the values corresponding to length of the
>sequence, seq id, and motif id, start and significance/score.
>I can get the last three using 
>
>foreach my $instance (@{ $instances }) {
>        my $start = $instance -> start;
>        my $score = $instance -> score;
>
>But i cannot find out how to get the seq id and seq length.
>any ideas?
>thanks
>-nandita
>
>***************************************************
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>Dept. of Genetics
>UGA, Athens GA 30602 USA
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>Lab add: C318 Life Sciences
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