[Bioperl-l] parsing blast output
Tuan A. Tran
tuantran167 at gmail.com
Sat Jun 18 01:42:41 EDT 2005
Hi,
When I blasted my query sequence against a database, the got the
following line (for example)
>3R type=chromosome; loc=3R:1..27905053; ID=3R; release=r4.1; species=dmel
Using bioperl module,
$blast_report = $factory->blastall($query);
I can extract some information like ID = 3R using
$blast_report->next_result->hits()->name;
If I want to keep the entire line as show above what should I do? Is
there a module in bioperl? I really appreciate if someone can tell me
how to do it.
Thanks,
TAT
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