[Bioperl-l] Re: Bioperl-l Digest, Vol 27, Issue 8

[Marc Logghe]

Hi Ping,
I have a strong feeling you are looking for bioperl-db/biosql.
As soon as you have set up the system you can load your genbank records with the command:
load_seqdatabase.pl --host localhost --dbname biosql \
                       --namespace my_genbank --format genbank \
                       my/genbank/file.gb

You can perform queries using the API or fetch records by accession number with the bioentry2flat.pl script.
A good starting point is the BOSC2003 presentation of Hilmar:
http://www.open-bio.org/bosc2003/slides/Persistent_Bioperl_BOSC03.pdf
HTH,
Marc


-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org on behalf of Ping Yao
Sent: Thu 7/21/2005 6:49 PM
To: bioperl-l at portal.open-bio.org
Subject: [Bioperl-l] Re: Bioperl-l Digest, Vol 27, Issue 8
 
Hi group :
 I want to download genes from genbank and put them in my local database 
MySQL.
 Now what I can do is to download into different files .
 So who can help me put them into MySQL ?
 Or does anyone have the code for it and let me try ?
 Ping

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