[Bioperl-l] bioperl-db: Searcing
Johan Viklund
johan.viklund at gmail.com
Thu Jul 21 08:18:35 EDT 2005
Hello again,
I've got new bioperl-db problem:
This is my context:
I've got a number of sequences in the databases (complete genomes from
refseq). I want to be able to find all the db_xrefs for a feature when
i've got GeneID or GI for that feature (prefarably this should be
returned as a Bio::SeqFeatureI compliant object).
If this isn't [currently] possible, how do I get a Bio::SeqFeatureI
object from the database?
For the record, I can do this with sql-queries and dbi, I want to know
if there's a bioperl way.
--
Johan Viklund
E-post: <johan.viklund at gmail.com>
-----------------
perl -we '$,=" ";$_=bless sub{shift;print
split(/::/,ref)},Just::Another::Perl::Hacker;&$_'
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