[Bioperl-l] error installing bioperl-db
Andrew Stewart
astew at wam.umd.edu
Tue Jul 19 18:03:19 EDT 2005
I'm having a problem while trying to install the bioperl-db modules.
While trying to run a make test, I get the following error:
t/01dbadaptor.....ok
1/13
------------- EXCEPTION -------------
*MSG: Failed to load module Bio::DB::DBI::postgresql*. Can't locate
Bio/DB/DBI/postgresql.pm in @INC (@INC contains: t
/usr/local/bioperl-db/blib/lib /usr/local/bioperl-db/blib/arch
/sw/lib/perl5/5.8.1/darwin-thread-multi-2level /sw/lib/perl5/5.8.1
/sw/lib/perl5 /sw/lib/perl5/darwin /Users/astew/usr/lib
/System/Library/Perl/5.8.1/darwin-thread-multi-2level
/System/Library/Perl/5.8.1
/Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1
/Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level
/Network/Library/Perl/5.8.1 /Network/Library/Perl .) at
/sw/lib/perl5/5.8.1/Bio/Root/Root.pm line 396.
STACK Bio::Root::Root::_load_module /sw/lib/perl5/5.8.1/Bio/Root/Root.pm:398
STACK Bio::DB::SimpleDBContext::dbi
/usr/local/bioperl-db/blib/lib/Bio/DB/SimpleDBContext.pm:296
STACK Bio::DB::BioSQL::DBAdaptor::new
/usr/local/bioperl-db/blib/lib/Bio/DB/BioSQL/DBAdaptor.pm:85
STACK Bio::DB::BioDB::new /usr/local/bioperl-db/blib/lib/Bio/DB/BioDB.pm:203
STACK DBTestHarness::get_DBAdaptor t/DBTestHarness.pm:257
STACK DBTestHarness::get_DBContext t/DBTestHarness.pm:272
STACK toplevel t/01dbadaptor.t:23
--------------------------------------
t/01dbadaptor.....dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 2-13
Failed 12/13 tests, 7.69% okay
Where am I supposed to find Bio::DB::DBI::postgresql ?
-Andrew Stewart
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