[Bioperl-l] bioperl-run Codeml.pm fix_blength

Albert Vilella avilella at gmail.com
Tue Jul 12 11:19:45 EDT 2005


Hi,

I noticed that the valid values for fix_blength in Codeml.pm do not
include option "fix_blength 1: initial",

I agreed, I would add it myself in cvs:

bioperl-run/Bio/Tools/Run/Phylo/PAML/Codeml.pm

		     'fix_blength'   => [0,-1,2],
change to:
		     'fix_blength'   => [0,-1,1,2],

Jason?

Bests,

    Albert.



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