[Bioperl-l] Gene Features

[Nathan Haigh]

I'm working on Arabidopsis thaliana and I'd like to identify candidate genes
based on their gene features. In particular I'd like to identify genes with
introns within a specific range.

I have obtained a file from TIGR describing gene features:

ftp://ftp.arabidopsis.org/home/tair/Maps/seqviewer_data/sv_gene_feature.data

 

I wondered if anyone might have some code for doing this type of thing?
Would the use of Bio::SeqFeature be overkill and can it be used without
actually having the gene sequences?

Thanks

Nathan

 

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Nathan Haigh

Bioinformatics PostDoctoral Research Associate

 

Room B2 211

Department of Animal and Plant Sciences

University of Sheffield

Western Bank

Sheffield

S10 2TN

 

Tel: +44 (0)114 22 20112

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Fax: +44 (0)114 22 20002