[Bioperl-l] Advice on using bioperl

[CHANDAN SINGH]

Hi JAP 
I dont understand why u cant set the proxy . If the environment proxy
variable is set
u can easily use  Remoteblast.pm .I had posted  a mail regarding this
two days ago  .
It might help u . Do reply if it helps .
See u 
Chandan



On 7/10/05, Jaqueline Ann Page <J.A.Page at newcastle.ac.uk> wrote:
> 
> Hi Everyone
> 
> I had trouble using the remote blast bioperl as I could't set the proxy. So I used NCBI webblasst.pl code on their web site. This sends queries to qblast gets back the result into a variable called $content ( containing the blast report).  I dont know
>  to pass this to bioperl code. How do I create a $blast_report object to pass it to.  Then I would be able to use my $result = $blast_report->next_result;
> 
> 
>         while(  $result = $in->next_result )
> 
> 
> etc
> 
> Thanks in advance
> 
> Jackie
> 
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