[Bioperl-l] use cases for SeqWithQuality, please

[Heikki Lehvaslaiho]

I've compared Bio::Seq::SeqWithQuality with Bio::Seq::MetaI schema and there 
does not seem to be too many differences. All the functionality seems to be 
there already. The main problem is that there are many different ways to call 
the constructor. 

There are so many ways to call it and some methods are already depreciated 
that it would be better to write a replacement module than try to rewrite all 
methods.


Could I ask those who use  Bio::Seq::SeqWithQuality now to send be sample code 
that shows how they call this module in practise. 

With that information I could write a Bio::Seq::Quality that implements 
Bio::Seq::MetaI and we could depreciate Bio::Seq::SeqWithQuality.

Are you happy with that, Chad?

 -Heikki

-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki at_ebi _ac _uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambridge, CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
___ _/_/_/_/_/________________________________________________________