[Bioperl-l] various problems with mdk bioperl package

[Hilmar Lapp]

I think you may be confusing Bio::DB::GFF with Bio::DB::BioSQL. AFAIK 
there hasn't been any test in bioperl-live that would require 
bioperl-db since a long time.

	-hilmar
On Sunday, January 30, 2005, at 12:26  PM, Allen Day wrote:

> I was thinking about this as well.  I agree that bioperl-db requiring
> scripts should be moved out of the bioperl-live repository.
>
> We might also think about distributing a bioperl-core package that
> contains Bio::Root::*, and separate packages for each of the *IO
> subsystems (SeqIO, SearchIO, FeatureIO, etc).
>
> -Allen
>
>
>> Third, I'd like to split the package a little bit, to avoid drawing so
>> much dependencies. Here is the whole list of external dependencies of
>> the current package, as automatically computed by rpm:
>> perl(CGI)
>> perl(CGI::Carp)
>> perl(Cache::FileCache)
>> perl(Carp)
>> perl(Class::AutoClass)
>> perl(Clone)
>> perl(DBI)
>> perl(DB_File)
>> perl(Data::Dumper)
>> perl(Data::Stag)
>> perl(Data::Stag::XMLWriter)
>> perl(Digest::MD5)
>> perl(Dumpvalue)
>> perl(English)
>> perl(Error)
>> perl(Exporter)
>> perl(Fcntl)
>> perl(File::Basename)
>> perl(File::Path)
>> perl(File::Spec)
>> perl(File::Temp)
>> perl(FileHandle)
>> perl(GD)
>> perl(Getopt::Long)
>> perl(Getopt::Std)
>> perl(HTML::Entities)
>> perl(HTML::HeadParser)
>> perl(HTML::Parser)
>> perl(HTTP::Request::Common)
>> perl(HTTP::Response)
>> perl(IO::File)
>> perl(IO::Handle)
>> perl(IO::Socket)
>> perl(IO::String)
>> perl(LWP)
>> perl(LWP::Simple)
>> perl(LWP::UserAgent)
>> perl(Math::BigFloat)
>> perl(POSIX)
>> perl(Pod::Usage)
>> perl(SOAP::Lite)
>> perl(SVG::Graph)
>> perl(SVG::Graph::Data)
>> perl(SVG::Graph::Data::Node)
>> perl(SVG::Graph::Data::Tree)
>> perl(Storable)
>> perl(Symbol)
>> perl(TestInterface)
>> perl(Text::Shellwords)
>> perl(Text::Wrap)
>> perl(Tie::Handle)
>> perl(Tie::RefHash)
>> perl(Tree::DAG_Node)
>> perl(UNIVERSAL)
>> perl(URI)
>> perl(URI::Escape)
>> perl(XML::DOM)
>> perl(XML::DOM::XPath)
>> perl(XML::Handler::Subs)
>> perl(XML::Parser)
>> perl(XML::Parser::PerlSAX)
>> perl(XML::SAX)
>> perl(XML::SAX::Base)
>> perl(XML::SAX::Writer)
>> perl(XML::Twig)
>> perl(XML::Writer) >= 0.4
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-- 
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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