[Bioperl-l] various problems with mdk bioperl package

[Allen Day]

I was thinking about this as well.  I agree that bioperl-db requiring 
scripts should be moved out of the bioperl-live repository.

We might also think about distributing a bioperl-core package that
contains Bio::Root::*, and separate packages for each of the *IO
subsystems (SeqIO, SearchIO, FeatureIO, etc).

-Allen


> Third, I'd like to split the package a little bit, to avoid drawing so 
> much dependencies. Here is the whole list of external dependencies of 
> the current package, as automatically computed by rpm:
> perl(CGI)
> perl(CGI::Carp)
> perl(Cache::FileCache)
> perl(Carp)
> perl(Class::AutoClass)
> perl(Clone)
> perl(DBI)
> perl(DB_File)
> perl(Data::Dumper)
> perl(Data::Stag)
> perl(Data::Stag::XMLWriter)
> perl(Digest::MD5)
> perl(Dumpvalue)
> perl(English)
> perl(Error)
> perl(Exporter)
> perl(Fcntl)
> perl(File::Basename)
> perl(File::Path)
> perl(File::Spec)
> perl(File::Temp)
> perl(FileHandle)
> perl(GD)
> perl(Getopt::Long)
> perl(Getopt::Std)
> perl(HTML::Entities)
> perl(HTML::HeadParser)
> perl(HTML::Parser)
> perl(HTTP::Request::Common)
> perl(HTTP::Response)
> perl(IO::File)
> perl(IO::Handle)
> perl(IO::Socket)
> perl(IO::String)
> perl(LWP)
> perl(LWP::Simple)
> perl(LWP::UserAgent)
> perl(Math::BigFloat)
> perl(POSIX)
> perl(Pod::Usage)
> perl(SOAP::Lite)
> perl(SVG::Graph)
> perl(SVG::Graph::Data)
> perl(SVG::Graph::Data::Node)
> perl(SVG::Graph::Data::Tree)
> perl(Storable)
> perl(Symbol)
> perl(TestInterface)
> perl(Text::Shellwords)
> perl(Text::Wrap)
> perl(Tie::Handle)
> perl(Tie::RefHash)
> perl(Tree::DAG_Node)
> perl(UNIVERSAL)
> perl(URI)
> perl(URI::Escape)
> perl(XML::DOM)
> perl(XML::DOM::XPath)
> perl(XML::Handler::Subs)
> perl(XML::Parser)
> perl(XML::Parser::PerlSAX)
> perl(XML::SAX)
> perl(XML::SAX::Base)
> perl(XML::SAX::Writer)
> perl(XML::Twig)
> perl(XML::Writer) >= 0.4