[Bioperl-l] Bio::SearchIO::blast parsing problem with long hit scores

[Jason Stajich]

Can you put an example report with the bug report on bugzilla?  I think 
I have a fix but want to test it out on the real data.

-jason
On Jan 26, 2005, at 1:50 PM, Scott Markel wrote:

> I have a blastn result with a hit score that's in exponential
> notation.  Bio::SearchIO::blast truncates "2.741e+004" to "004".
> I get the same result in 1.4 and 1.5.
>
> Sequences producing significant alignments:                      
> (bits) Value
>
> emb|AJ010957.1|HAAJ10957 Hippopotamus amphibius complete mitocho...  
> 2.741e+004   0.0
> gb|U31048.1|PRU31048 Pronolagus rupestris, Donkerpoort, South Af...   
> 305   1e-080
>
> Scott
>
> -- 
> Scott Markel, Ph.D.
> Principal Bioinformatics Architect  email:  smarkel at scitegic.com
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--
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/