[Bioperl-l] Bio::SearchIO::blast parsing problem with long hit scores

Scott Markel smarkel at scitegic.com
Wed Jan 26 13:50:35 EST 2005


I have a blastn result with a hit score that's in exponential
notation.  Bio::SearchIO::blast truncates "2.741e+004" to "004".
I get the same result in 1.4 and 1.5.

Sequences producing significant alignments:                      (bits) Value

emb|AJ010957.1|HAAJ10957 Hippopotamus amphibius complete mitocho...  2.741e+004   0.0
gb|U31048.1|PRU31048 Pronolagus rupestris, Donkerpoort, South Af...   305   1e-080

Scott

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Scott Markel, Ph.D.
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