[Fwd: Re: [Bioperl-l] bioperl-run for windows?]

[Chris Fields]

There is an EMBOSS release for Windows, believe it or not.  It is currently 
at v. 2.7.1 and can be found at:

http://perso.wanadoo.fr/ablavier/embosswin/embosswin.html

I have no idea if it will work with Bioperl, though.  Might be interesting 
to try at some point.

Chris

At 04:18 PM 1/24/2005, you wrote:
>Some will work, and some won't. I've installed it on Windows, and used it
>a bit there. One problem you'll run into is that you can't use bioperl
>to run a program that can't be installed on Windows (EMBOSS for example) 
>so you'll
>be limited that way, but check out the Pise interface for any of that
>software. You should be able to get access to alot of non-windows
>software via bioperl by using the Pise interface (
>
>Bio::Tools::Run::AnalysisFactory::Pise
>
>http://www.pasteur.fr/recherche/unites/sis/Pise/
>
>
>Barry
>
>Tim Alcon wrote:
>
> > If I just grab it off CPAN, will it work on Windows, or does it use
> > Unix system calls?
> >
> > Tim
> >
> >
> >
> > Jason Stajich wrote:
> >
> >> Is there a PPM on the bioperl site?
> >> No
> >>
> >> Can you install bioperl-run on windows?
> >> Yes - but you'll have to do it manually, or learn how to build PPMs
> >> (quite simple really), or encourage someone to produce a PPM for
> >> bioperl-run.
> >>
> >> -jason
> >> On Jan 22, 2005, at 7:57 PM, Tim Alcon wrote:
> >>
> >>> Does a Windows version of bioperl-run exitst? If so, how do I get it?
> >>>
> >>> Tim
> >>>
> >>>
> >>> _______________________________________________
> >>> Bioperl-l mailing list
> >>> Bioperl-l at portal.open-bio.org
> >>> http://portal.open-bio.org/mailman/listinfo/bioperl-l
> >>>
> >>>
> >> --
> >> Jason Stajich
> >> jason.stajich at duke.edu
> >> http://www.duke.edu/~jes12/
> >>
> >>
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at portal.open-bio.org
> > http://portal.open-bio.org/mailman/listinfo/bioperl-l
>
>
>--
>Barry Moore
>Dept. of Human Genetics
>University of Utah
>Salt Lake City, UT
>
>
>
>--
>Barry Moore
>Dept. of Human Genetics
>University of Utah
>Salt Lake City, UT
>
>
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__________________________________

Chris Fields - Postdoctoral Researcher
Lab of Dr. Robert Switzer

Address:

University of Illinois at Urbana-Champaign
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Phone : (217) 333-7098
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