[Bioperl-l] Bio::Seq objects from BLAST hits
Jon manning
jrm at compbio.dundee.ac.uk
Tue Jan 25 06:52:58 EST 2005
Hi all,
I have previously used Bio::DB::SwissProt to retrieve sequence objects
using accession numbers derived from a BLAST search, which I
subsequently aligned. Now I'm using BLAST to search the PDB (though I'm
only interested in sequences), so don't have Bio::DB module for that.
What would be the best way to derive a Bio::Seq object from the
Bio::Hit::BlastHit objects?
Thanks,
Jon
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