[Bioperl-l] bioperl-1.5.0 RC2

[Jason Stajich]

Thanks Razi.

Tests were succeeding for me with Graph 0.20105-1 - when I upgraded to  
Graph 0.52 it also worked. I am running perl 5.8.3 though so don't know  
what is the problem with compatibility.  Do you have the same problems  
with Graph 0.52?
Going to need someone who can reproduce the bug to debug and fix.

Since this is a developer release I am not going to hold out on this  
part too much.  We'll try and get it closed out, otherwise release  
which ship with some tests turned off.

I would like to do the release on this coming Monday if possible.

-jason
On Jan 12, 2005, at 10:52 PM, Razi Khaja wrote:

> I've tested RC2 on FreeBSD 5.3 running perl5.8.5 on i386.  This has  
> been
> tested with all prerequisite modules installed (including  
> Graph::Directed
> (J/JH/JHI/Graph-0.51.tar.gz)as perl output of 'perl Makefile.PL'.
>
> Attached is the output of make test (make_test.out.gz).
>
> Summary of make test included here:
> Failed 3/193 test scripts, 98.45% okay. 155/8956 subtests failed,  
> 98.27%
> okay.
> Failed Test        Stat Wstat Total Fail  Failed  List of Failed
> ----------------------------------------------------------------------- 
> --------
> t/Ontology.t        255 65280    50  100 200.00%  1-50
> t/OntologyStore.t                 6    4  66.67%  3-6
> t/simpleGOparser.t  255 65280   101  202 200.00%  1-101
> 2 subtests skipped.
> *** Error code 25
>
> Stop in  
> /usr/home/bioperl/bioperl-1.5.0- 
> RC2.<make_test.out.gz>_______________________________________________
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--
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/