[Bioperl-l] ->add_tag_value()

[Allen Day]

This is fixed in CVS.

-Allen

On Thu, 25 Aug 2005, Andrew Stewart wrote:

> I'm trying to create genbank files from a sequence file and features 
> retreived from glimmer output.  When creating the new features and 
> writing them to the genbank (richseq) object, though, I get the 
> following output (for example)...
> 
>      CDS             21..596
>                      
> /translation="Bio::Annotation::SimpleValue=HASH(0x987b78)"
>      CDS             complement(1713..2903)
>                      
> /translation="Bio::Annotation::SimpleValue=HASH(0x987944)"
>      CDS             complement(3236..4258)
>                      
> /translation="Bio::Annotation::SimpleValue=HASH(0x9be8e4)"
>      CDS             4350..5936
>                      
> /translation="Bio::Annotation::SimpleValue=HASH(0x9bead0)"
>      CDS             6181..6819
>                      
> /translation="Bio::Annotation::SimpleValue=HASH(0x9bebd8)"
> 
> The translation tag I added is for some reason being shown as a hash.  
> The code in question is here...
> 
>     my $translation = $seqo->subseq($start, $stop);
>     $feat->add_tag_value("translation",$translation);
> 
> Everything there is ok, as far as I can tell.  I was able to spit the 
> 'translation' tag back out with some test code just fine.  Near as I can 
> tell, either $feat->add_tag_value() is setting the tag value as a 
> reference, or the tag value is being retreived as such when the feature 
> is written to the seq object (or somewhere else in the process).
> 
> Anyone have any idea what might be going on here?
> 
> 
> -Andrew Stewart
> BDRD
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