[Bioperl-l] Strange result

Ewan Birney birney at ebi.ac.uk
Wed Aug 24 08:55:11 EDT 2005



Barry Moore wrote:
> Show us the code that produced this result.
> 
> Barry
> 
> thechans at citiz.net wrote:
> 
>> Hello,
>> I am new to Bioperl. I want to just copy some sequences out of an 
>> existing genbank file(multiple seq included).
>> The selected sequences is still gb format and put to a new file.
>> I received no warning and it worked well but the new file showed 
>> something strange.
>> e.g,
>>                     
>> /country="Bio::Annotation::SimpleValue=HASH(0x1bdc7a4)"
>>                     
>> /db_xref="Bio::Annotation::SimpleValue=HASH(0x1bdc9cc)"
>>                     
>> /mol_type="Bio::Annotation::SimpleValue=HASH(0x1bdca68)"
>>                     
>> /isolate="Bio::Annotation::SimpleValue=HASH(0x1bdc8ac)"
>>                     
>> /organism="Bio::Annotation::SimpleValue=HASH(0x1bdc954)"
>> why it happened?
>>

And the version. This is a 1.5x bug due to the skew that
happened in the ontology/embl/genbank thingy. I think if you
went back to an earlier version of bioperl you'd be fine.



>>
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>>  
>>
> 


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