[Bioperl-l] Strange result
Ewan Birney
birney at ebi.ac.uk
Wed Aug 24 08:55:11 EDT 2005
Barry Moore wrote:
> Show us the code that produced this result.
>
> Barry
>
> thechans at citiz.net wrote:
>
>> Hello,
>> I am new to Bioperl. I want to just copy some sequences out of an
>> existing genbank file(multiple seq included).
>> The selected sequences is still gb format and put to a new file.
>> I received no warning and it worked well but the new file showed
>> something strange.
>> e.g,
>>
>> /country="Bio::Annotation::SimpleValue=HASH(0x1bdc7a4)"
>>
>> /db_xref="Bio::Annotation::SimpleValue=HASH(0x1bdc9cc)"
>>
>> /mol_type="Bio::Annotation::SimpleValue=HASH(0x1bdca68)"
>>
>> /isolate="Bio::Annotation::SimpleValue=HASH(0x1bdc8ac)"
>>
>> /organism="Bio::Annotation::SimpleValue=HASH(0x1bdc954)"
>> why it happened?
>>
And the version. This is a 1.5x bug due to the skew that
happened in the ontology/embl/genbank thingy. I think if you
went back to an earlier version of bioperl you'd be fine.
>>
>> _______________________________________________
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>> Bioperl-l at portal.open-bio.org
>> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>>
>>
>
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