[Bioperl-l] Bioperl version string not picked up by MakeMaker

[Aaron J. Mackey]

One backward-compatible alternative is to direct your PREREQ_PM to  
Bio::Root::Version instead of Bio::Perl, but I like your forward- 
compatible solution as well.

-Aaron

On Aug 8, 2005, at 3:02 PM, <lstein at cshl.edu> <lstein at cshl.edu> wrote:

> Hi,
>
> Sadly, the Bio::Root::Version system does not play nicely with
> MakeMaker. I have a WriteMakefile() routine in the gbrowse Makefile.PL
> which looks like this:
>
> WriteMakefile(
>           'NAME'         => 'Generic-Genome-Browser',
>           'VERSION'      => $VERSION,
>           'PREREQ_PM'    => {
>                  Bio::Perl         => 1.5,
>                  GD                => 2.07,
>                  IO::String        => 0,
>                  Text::Shellwords  => 1.0,
>                 }, # e.g., Module::Name => 1.1
>         ...);
>
>
> But when I run perl Makefile.PL I get:
>
>    Warning: prerequisite Bio::Perl 1.5 not found. We have unknown
>             version.
>
> I have added a "use Bio::Root::Version '$VERSION'" to Bio/Perl.pm and
> this seems to fix the problem, but someone who understands MakeMaker
> better had better confirm that this is the right solution.
>
> Lincoln
>
> -- 
> Lincoln D. Stein
> Cold Spring Harbor Laboratory
> 1 Bungtown Road
> Cold Spring Harbor, NY 11724
> FOR URGENT MESSAGES & SCHEDULING,
> PLEASE CONTACT MY ASSISTANT,
> SANDRA MICHELSEN, AT michelse at cshl.edu
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--
Aaron J. Mackey, Ph.D.
Project Manager, ApiDB Bioinformatics Resource Center
Penn Genomics Institute, University of Pennsylvania
email:  amackey at pcbi.upenn.edu
office: 215-898-1205 (Goddard) / 215-746-7018 (PCBI)
fax:    215-746-6697
postal: Penn Genomics Institute
         Goddard Labs 212
         415 S. University Avenue
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