[Bioperl-l] SearchIO broken

[Brian Osborne]

bioperl-l,

I'm not sure what's been decided with respect to backing out changes in
Annotation and SeqFeature for possible release in 1.6 but SearchIO is broken
now in bioperl-live, probably due to these changes.

149 ~/bioperl-live>perl -I. -w t/SearchIO.t
1..1216
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13

-------------------- WARNING ---------------------
MSG: error in parsing a report:
 Can't locate object method "has_tag" via package
"Bio::SeqFeature::Similarity"
at Bio/SeqFeature/Generic.pm line 889.

---------------------------------------------------
Can't call method "next_hit" on an undefined value at t/SearchIO.t line 84.


Brian O.