[Bioperl-l] Bio::DB::Query::GenBank

Aaron J. Mackey amackey at pcbi.upenn.edu
Mon Nov 29 08:58:51 EST 2004


If you try again late at night (meaning late at night EST), you may get 
all 5000 hits; NCBI seems to have implemented a limit of 500 entries in 
batch retrieval when network load is already high, but you may be 
successful during non-peak hours ...

-Aaron

On Nov 29, 2004, at 4:26 AM, Wuming Gong wrote:

> Hi Mona,
>
> I have met the same kind of problem. You may pull down the sequences
> once by less than 500 and It works.
>
> Wuming
>
>
> On Thu, 04 Nov 2004 21:12:40 -0700, Ligia Mateiu <lmateiu at ualberta.ca> 
> wrote:
>> Hi all,
>> I used a query for which exists >5000 hits in Genbank, but my code
>> retrieved just the very fist 500.
>>
>> Any idea why?
>>
>> Thanks a lot,
>> Mona
>>
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--
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania       email:  amackey at pcbi.upenn.edu
415 S. University Avenue         office: 215-898-1205
Philadelphia, PA  19104-6017     fax:    215-746-6697



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