[Bioperl-l] RemoteBlast with same e-val (10 vs 1e-10) works

[Madeleine Lemieux]

Affan,

I ran your code with the expected value set to 10, as it is by default 
on the NCBI Blast form, and got exactly the same results as when I 
blasted your sequence on the NCBI server.

Madeleine

----- Output from your code calling RemoteBlast with e-val = 10
Query Name: affan
         hit name is gb|AE016803.1|
                 score is 22
         hit name is gb|AC124687.4|
                 score is 20
         hit name is gb|AC112701.6|
                 score is 20
         hit name is gb|AC016932.17|
                 score is 20
         hit name is gb|AE008564.1|AE008564
                 score is 20
         hit name is gb|AC073964.3|AC073964
                 score is 20

----- NCBI Blast output
                                                                  Score  
   E
Sequences producing significant alignments:                      (bits) 
Value

gi|27361305|gb|AE016803.1|  Vibrio vulnificus CMCP6 chromoso...    44   
0.28
gi|27356737|gb|AC124687.4|  Mus musculus BAC clone RP24-447D...    40   
4.4
gi|22296769|gb|AC112701.6|  Mus musculus BAC clone RP23-171A...    40   
4.4
gi|15789223|gb|AC016932.17|  Homo sapiens 3 BAC RP11-166C10 ...    40   
4.4
gi|15459696|gb|AE008564.1|AE008564  Streptococcus pneumoniae...    40   
4.4