[Bioperl-l] Error using Bio::DB::SwissProt
Susan J. Miller
sjmiller at email.arizona.edu
Fri Nov 5 18:52:59 EST 2004
When I run this small script:
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#!/usr/local/bin/perl -w
use Bio::DB::SwissProt;
$sp = Bio::DB::SwissProt->new();
$seqObj = $sp->get_Seq_by_acc('Q10654');
print $seqObj->display_id() . "\n";
---------------------------------------
I see the error message:
Use of uninitialized value in substitution (s///) at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/SeqIO/swiss.pm line 855,
<STREAM> line 30.
---------------------------------------
The get_Seq_by_acc works, but I would like to present this to a class
and not have the error message show up. Any suggestions?
--
Thanks,
-susan
Susan J. Miller
Biotechnology Computing Facility
Arizona Research Laboratories
Bio West 228
University of Arizona
Tucson, AZ 85721
(520) 626-2597
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