[Bioperl-l] graphing trees

[Sean Davis]

Did you look at:

http://workshop.molecularevolution.org/resources/fileformats/ 
tree_formats.php

I happen to use R (statistical programming environment), which has some  
stuff for plotting trees (which I don't use).
http://pbil.univ-lyon1.fr/ade4html/plot.phylog.html

You might do a web search for "newick tree" to get stuff related to  
newick format and drawing it.


On Nov 3, 2004, at 12:00 PM, Guillaume Rousse wrote:

> Sean Davis wrote:
>> Not a bioperl answer, but you might want to look at:
>> http://search.cpan.org/search?query=graphviz&mode=all
>> Graphviz is a very nice package for dealing with graph visualization.
> It's what I used sofar, however it's not that practical for trees:
> - internal nodes are always visible
> - edges are always directs
> - you can't adjust their length easily