[Bioperl-l] Quick basic question about Bio::SeqIO::LocusLink

[Sean Davis]

Hilmar,

Thanks for helping out.  I can get LWP to give me the ASCII flat file, so it
is easy enough to use IO::String to create the filehandle from that.

Sean

On 5/28/04 1:58, "Hilmar Lapp" <hlapp at gmx.net> wrote:

> Actually you can of course also pass in a filehandle. I believe that
> LWP won't give you that though.
> 
> -hilmar
> 
> On Thursday, May 27, 2004, at 09:37  PM, Sean Davis wrote:
> 
>> Sorry.  Getting late.  Answered my own question:  IO::String.
>> 
>> Thanks,
>> Sean
>> 
>> On 5/28/04 0:11, "Sean Davis" <sdavis2 at mail.nih.gov> wrote:
>> 
>>> All,
>>> 
>>> I am getting locuslink records via a web query (using LWP) and would
>>> like to
>>> use Bio::SeqIO::LocusLink to parse the result.  It is in the typical
>>> locuslink flat file format, but I would rather not write it to disk
>>> just so
>>> I can read it back in.  Is there a way to use a filehandle or to
>>> parse the
>>> object directly without having it read?
>>> 
>>> Thanks,
>>> Sean
>>> 
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>>> Bioperl-l at portal.open-bio.org
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>>> 
>> 
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