[Bioperl-l] How to format an alignment to occur over several lines instead of one line

[omid at rogers.com]

Hello All,

I have parsed alignments from a blast report using the BPlite module. However the alignment is in the form of:

1 aaaaaaaaaaaaaaaaaaaaaaaaaa....aaaaaaaa 1000
  ||||||||||||||||||||||||||....||||||||
1 aaaaaaaaaaaaaaaaaaaaaaaaaa....aaaaaaaa 1000

depending on the size of the alignment this could be quite long.

How can get the alignment to occur over several line so that it is easier to view ie..

aaaaaaaa
||||||||
aaaaaaaa

aaaaaaaa
||||||||
aaaaaaaa

is there a module in bioperl that would assist in accomplishing such tasks.

Thanks
Omid








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