[Bioperl-l] aligning one sequence o a preformed alignment

[Aaron J. Mackey]

clustalw should do what you want, with the right options (see clustalw 
-help)

-Aaron

On May 19, 2004, at 11:52 AM, luisa pugliese wrote:

> Hi Bioperlers,
>     I would like to align a sequence to an alignment I already have, 
> without
> changing the alignment between the other sequences involved in it. Does
> anybody knows if there is a module within bioperl or a program that 
> can be
> run by bioperl-run that could do this job?
> Thank you to all
> Luisa
> =============================
> Luisa Pugliese, Ph.D.
> luisa.pugliese at safan-bioinformatics.it
> S.A.F.AN. BIOINFORMATICS
> Corso Tazzoli 215/13 -10137 Torino - ITALY
> tel +39 011 3026230
> cell. +39 333 6130644
>
>
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>
--
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania       email:  amackey at pcbi.upenn.edu
415 S. University Avenue         office: 215-898-1205
Philadelphia, PA  19104-6017     fax:    215-746-6697